Module io.jenetics.base

Package io.jenetics

Class AnyChromosome<A>

java.lang.Object

io.jenetics.AbstractChromosome<AnyGene<A>>

io.jenetics.AnyChromosome<A>

All Implemented Interfaces:

Chromosome<AnyGene<A>>, BaseSeq<AnyGene<A>>, Factory<Chromosome<AnyGene<A>>>, Verifiable, Iterable<AnyGene<A>>, RandomAccess

public class AnyChromosome<A>
extends AbstractChromosome<AnyGene<A>>

Chromosome implementation, which allows creating genes without explicit implementing the Chromosome interface.

public class LastMonday {

    // First monday of 2015.
    private static final LocalDate MIN_MONDAY = LocalDate.of(2015, 1, 5);

    // The used Codec.
    private static final Codec<LocalDate, AnyGene<LocalDate>> CODEC = Codec.of(
        Genotype.of(AnyChromosome.of(LastMonday::nextRandomMonday)),
        gt -> gt.gene().allele()
    );

    // Supplier of random 'LocalDate' objects. The implementation is responsible
    // for guaranteeing the desired allele restriction. In this case we will
    // generate only mondays.
    private static LocalDate nextRandomMonday() {
        return MIN_MONDAY.plusWeeks(RandomRegistry.getRandom().nextInt(1000));
    }

    // The fitness function: find a monday at the end of the month.
    private static double fitness(final LocalDate date) {
        return date.getDayOfMonth();
    }

    public static void main(final String[] args) {
        final Engine<AnyGene<LocalDate>, Double> engine = Engine
            .builder(LastMonday::fitness, CODEC)
            .offspringSelector(new RouletteWheelSelector<>())
            .build();

        final Phenotype<AnyGene<LocalDate>, Double> best = engine.stream()
            .limit(50)
            .collect(EvolutionResult.toBestPhenotype());

        System.out.println(best);
    }

}

The full example above shows how the AnyChromosome is used to use it for an allele-type with no predefined gene- and chromosome type.

Since:

3.3

Version:

5.2

See Also:

• AnyGene

Implementation Requirements:

This class is immutable and thread-safe.

Field Summary

Fields inherited from class io.jenetics.AbstractChromosome

_genes

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	AnyChromosome(ISeq<AnyGene<A>> genes, Supplier<? extends A> supplier, Predicate<? super A> alleleValidator, Predicate<? super ISeq<A>> alleleSeqValidator, IntRange lengthRange)	Create a new AnyChromosome from the given genes array.

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object obj)
int	hashCode()
boolean	isValid()	Check if this object is valid.
IntRange	lengthRange()	Return the allowed length range of the chromosome.
Chromosome<AnyGene<A>>	newInstance()	Create a new instance of type T.
Chromosome<AnyGene<A>>	newInstance(ISeq<AnyGene<A>> genes)	A factory method which creates a new Chromosome of specific type and the given genes.
static <A> AnyChromosome<A>	of(Supplier<? extends A> supplier)	Create a new chromosome of type A with the given parameters and length one.
static <A> AnyChromosome<A>	of(Supplier<? extends A> supplier, int length)	Create a new chromosome of type A with the given parameters.
static <A> AnyChromosome<A>	of(Supplier<? extends A> supplier, IntRange lengthRange)	Create a new chromosome of type A with the given parameters.
static <A> AnyChromosome<A>	of(Supplier<? extends A> supplier, Predicate<? super A> validator)	Create a new chromosome of type A with the given parameters and length one.
static <A> AnyChromosome<A>	of(Supplier<? extends A> supplier, Predicate<? super A> validator, int length)	Create a new chromosome of type A with the given parameters.
static <A> AnyChromosome<A>	of(Supplier<? extends A> supplier, Predicate<? super A> validator, IntRange lengthRange)	Create a new chromosome of type A with the given parameters.
static <A> AnyChromosome<A>	of(Supplier<? extends A> supplier, Predicate<? super A> alleleValidator, Predicate<? super ISeq<A>> alleleSeqValidator, int length)	Create a new chromosome of type A with the given parameters.
static <A> AnyChromosome<A>	of(Supplier<? extends A> supplier, Predicate<? super A> alleleValidator, Predicate<? super ISeq<A>> alleleSeqValidator, IntRange lengthRange)	Create a new chromosome of type A with the given parameters.

Methods inherited from class io.jenetics.AbstractChromosome

get, length, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface io.jenetics.util.BaseSeq

forEach, isEmpty, iterator, listIterator, nonEmpty, spliterator, stream

Methods inherited from interface io.jenetics.Chromosome

as, gene

Methods inherited from interface io.jenetics.util.Factory

instances

Constructor Details

AnyChromosome

protected AnyChromosome(ISeq<AnyGene<A>> genes,
 Supplier<? extends A> supplier,
 Predicate<? super A> alleleValidator,
 Predicate<? super ISeq<A>> alleleSeqValidator,
 IntRange lengthRange)

Create a new AnyChromosome from the given genes array. A chromosome is valid if both, the alleleValidator and the alleleSeqValidator return true.

Parameters:

genes - the genes that form the chromosome.

supplier - the allele-supplier which is used for creating new, random alleles

alleleValidator - the validator used for validating the created gene. This predicate is used in the AnyGene.isValid() method.

alleleSeqValidator - the validator used for validating the created chromosome. This predicate is used in the isValid() method.

lengthRange - the allowed length range of the chromosome

Throws:

NullPointerException - if the given arguments is null

IllegalArgumentException - if the length of the gene sequence is empty, doesn't match with the allowed length range, the minimum or maximum of the range is smaller or equal zero, or the given range size is zero.

Method Details

isValid

public boolean isValid()

Description copied from interface: Verifiable

Check if this object is valid.

Specified by:

isValid in interface Chromosome<A>

Specified by:

isValid in interface Verifiable

Overrides:

isValid in class AbstractChromosome<AnyGene<A>>

Returns:

true if this object is valid, false otherwise.

newInstance

public Chromosome<AnyGene<A>> newInstance(ISeq<AnyGene<A>> genes)

Description copied from interface: Chromosome

A factory method which creates a new Chromosome of specific type and the given genes.

Parameters:

genes - the genes of the new chromosome. The given genes array is not copied.

Returns:

A new Chromosome of the same type with the given genes.

newInstance

public Chromosome<AnyGene<A>> newInstance()

Description copied from interface: Factory

Create a new instance of type T.

Returns:

a new instance of type T

of

public static <A> AnyChromosome<A> of(Supplier<? extends A> supplier,
 Predicate<? super A> alleleValidator,
 Predicate<? super ISeq<A>> alleleSeqValidator,
 IntRange lengthRange)

Create a new chromosome of type A with the given parameters.

Type Parameters:

A - the allele type

Parameters:

supplier - the allele-supplier which is used for creating new, random alleles

alleleValidator - the validator used for validating the created gene. This predicate is used in the AnyGene.isValid() method.

alleleSeqValidator - the validator used for validating the created chromosome. This predicate is used in the isValid() method.

lengthRange - the allowed length range of the chromosome

Returns:

a new chromosome of allele type A

Throws:

NullPointerException - if the given arguments is null

IllegalArgumentException - if chromosome length is smaller than one.

Since:

4.0

of

public static <A> AnyChromosome<A> of(Supplier<? extends A> supplier,
 Predicate<? super A> alleleValidator,
 Predicate<? super ISeq<A>> alleleSeqValidator,
 int length)

Create a new chromosome of type A with the given parameters.

Type Parameters:

A - the allele type

Parameters:

supplier - the allele-supplier which is used for creating new, random alleles

alleleValidator - the validator used for validating the created gene. This predicate is used in the AnyGene.isValid() method.

alleleSeqValidator - the validator used for validating the created chromosome. This predicate is used in the isValid() method.

length - the length of the chromosome

Returns:

a new chromosome of allele type A

Throws:

NullPointerException - if the given arguments is null

IllegalArgumentException - if chromosome length is smaller than one.

of

public static <A> AnyChromosome<A> of(Supplier<? extends A> supplier,
 Predicate<? super A> validator,
 IntRange lengthRange)

Create a new chromosome of type A with the given parameters.

Type Parameters:

A - the allele type

Parameters:

supplier - the allele-supplier which is used for creating new, random alleles

validator - the validator used for validating the created gene. This predicate is used in the AnyGene.isValid() method.

lengthRange - the allowed length range of the chromosome

Returns:

a new chromosome of allele type A

Throws:

NullPointerException - if the supplier or validator is null

IllegalArgumentException - if chromosome length is smaller than one.

Since:

4.0

of

public static <A> AnyChromosome<A> of(Supplier<? extends A> supplier,
 Predicate<? super A> validator,
 int length)

Create a new chromosome of type A with the given parameters.

Type Parameters:

A - the allele type

Parameters:

supplier - the allele-supplier which is used for creating new, random alleles

validator - the validator used for validating the created gene. This predicate is used in the AnyGene.isValid() method.

length - the length of the chromosome

Returns:

a new chromosome of allele type A

Throws:

NullPointerException - if the supplier or validator is null

IllegalArgumentException - if chromosome length is smaller than one.

of

public static <A> AnyChromosome<A> of(Supplier<? extends A> supplier,
 Predicate<? super A> validator)

Create a new chromosome of type A with the given parameters and length one.

Type Parameters:

A - the allele type

Parameters:

supplier - the allele-supplier which is used for creating new, random alleles

validator - the validator used for validating the created gene. This predicate is used in the isValid() method.

Returns:

a new chromosome of allele type A

Throws:

NullPointerException - if the supplier or validator is null

of

public static <A> AnyChromosome<A> of(Supplier<? extends A> supplier,
 IntRange lengthRange)

Create a new chromosome of type A with the given parameters. The validator predicate of the generated gene will always return true.

Type Parameters:

A - the allele type

Parameters:

supplier - the allele-supplier which is used for creating new, random alleles

lengthRange - the allowed length range of the chromosome

Returns:

a new chromosome of allele type A

Throws:

NullPointerException - if the supplier is null

IllegalArgumentException - if chromosome length is smaller than one.

Since:

4.0

of

public static <A> AnyChromosome<A> of(Supplier<? extends A> supplier,
 int length)

Create a new chromosome of type A with the given parameters. The validator predicate of the generated gene will always return true.

Type Parameters:

A - the allele type

Parameters:

supplier - the allele-supplier which is used for creating new, random alleles

length - the length of the created chromosome

Returns:

a new chromosome of allele type A

Throws:

NullPointerException - if the supplier is null

IllegalArgumentException - if chromosome length is smaller than one.

of

public static <A> AnyChromosome<A> of(Supplier<? extends A> supplier)

Create a new chromosome of type A with the given parameters and length one. The validator predicate of the generated gene will always return true.

Type Parameters:

A - the allele type

Parameters:

supplier - the allele-supplier which is used for creating new, random alleles

Returns:

a new chromosome of allele type A

Throws:

NullPointerException - if the supplier is null

lengthRange

public IntRange lengthRange()

Return the allowed length range of the chromosome. The minimum value of the range is included and the maximum value is excluded.

Returns:

the allowed length range of the chromosome

hashCode

public int hashCode()

Overrides:

hashCode in class AbstractChromosome<G extends Gene<?,G>>

equals

public boolean equals(Object obj)

Overrides:

equals in class AbstractChromosome<G extends Gene<?,G>>