io.jenetics.xml

Class Readers.Genotype

java.lang.Object

io.jenetics.xml.Readers.Genotype

Enclosing class:

Readers

public static final class Readers.Genotype
extends Object

Writer methods for Genotype objects.

XML format

 
 <genotype length="2" ngenes="5">
     <double-chromosome length="3">
         <min>0.0</min>
         <max>1.0</max>
         <alleles>
             <allele>0.27251556008507416</allele>
             <allele>0.003140816229067145</allele>
             <allele>0.43947528327497376</allele>
         </alleles>
     </double-chromosome>
     <double-chromosome length="2">
         <min>0.0</min>
         <max>1.0</max>
         <alleles>
             <allele>0.4026521545744768</allele>
             <allele>0.36137605952663554</allele>
         <alleles>
     </double-chromosome>
 </genotype>
 

Method Summary

Modifier and Type	Method and Description
static <A,G extends Gene<A,G>,C extends Chromosome<G>> Genotype<G>	read(InputStream in, Reader<? extends C> chromosomeReader) Reads a genotype by using the given chromosome reader.
static <A,G extends Gene<A,G>,C extends Chromosome<G>> Reader<Genotype<G>>	reader(Reader<? extends C> chromosomeReader) Create a genotype reader with he given chromosome reader.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

reader

public static <A,G extends Gene<A,G>,C extends Chromosome<G>> Reader<Genotype<G>> reader(Reader<? extends C> chromosomeReader)

Create a genotype reader with he given chromosome reader.

Type Parameters:

A - the allele type

G - the gene type

C - the chromosome type

Parameters:

chromosomeReader - the underlying chromosome reader

Returns:

a genotype reader with he given chromosome reader

Throws:

NullPointerException - if the given chromosomeReader is null

read

public static <A,G extends Gene<A,G>,C extends Chromosome<G>> Genotype<G> read(InputStream in,
                                                                               Reader<? extends C> chromosomeReader)
                                                                        throws XMLStreamException

Reads a genotype by using the given chromosome reader.

Type Parameters:

A - the allele type

G - the gene type

C - the chromosome type

Parameters:

in - the input stream to read the genotype from

chromosomeReader - the used chromosome reader

Returns:

a genotype by using the given chromosome reader

Throws:

XMLStreamException - if reading the genotype fails

NullPointerException - if one of the arguments is null