Module io.jenetics.base
Package io.jenetics

Class EnumGene<A>

java.lang.Object
io.jenetics.EnumGene<A>
All Implemented Interfaces:
Gene<A,EnumGene<A>>, Factory<EnumGene<A>>, Self<EnumGene<A>>, Verifiable, Serializable, Comparable<EnumGene<A>>
public final class EnumGene<A> extends Object implements Gene<A,EnumGene<A>>, Comparable<EnumGene<A>>, Serializable

Gene which holds enumerable (countable) genes. Will be used for combinatorial problems in combination with the PermutationChromosome.

The following code shows how to create a combinatorial genotype factory which can be used when creating an Engine instance.
final ISeq<Integer> alleles = ISeq.of(1, 2, 3, 4, 5, 6, 7, 8); final Factory<Genotype<EnumGene<Integer>>> gtf = Genotype.of( PermutationChromosome.of(alleles) );
The following code shows the assurances of the EnumGene.
final ISeq<Integer> alleles = ISeq.of(1, 2, 3, 4, 5, 6, 7, 8); final EnumGene<Integer> gene = new EnumGene<>(5, alleles); assert(gene.alleleIndex() == 5); assert(gene.allele() == gene.validAlleles().get(5)); assert(gene.validAlleles() == alleles);
Since:
1.0
Version:
5.2
See Also:
Implementation Note:
This class is immutable and thread-safe.

  • Method Summary

    Modifier and Type
    Method
    Description
    A
    allele()
    Return the allele of this gene.
    int
    alleleIndex()
    Return the index of the allele this gene is representing.
    int
    compareTo(EnumGene<A> gene)
     
    boolean
    equals(Object obj)
     
    int
    hashCode()
     
    boolean
    isValid()
    Check if this object is valid.
    EnumGene<A>
    newInstance()
    Return a new, random gene with the same type and with the same constraints as this gene.
    EnumGene<A>
    newInstance(A value)
    Create a new gene from the given value and the gene context.
    static <A> EnumGene<A>
    of(int alleleIndex, A... validAlleles)
    Create a new enum gene from the given valid genes and the chosen allele index.
    static <A> EnumGene<A>
    of(int alleleIndex, ISeq<? extends A> validAlleles)
    Create a new enum gene from the given valid genes and the chosen allele index.
    static <A> EnumGene<A>
    of(A... validAlleles)
    Return a new enum gene with an allele randomly chosen from the given valid alleles.
    static <A> EnumGene<A>
    of(ISeq<? extends A> validAlleles)
    Return a new enum gene with an allele randomly chosen from the given valid alleles.
    String
    toString()
     
    ISeq<A>
    validAlleles()
    Return sequence of the valid alleles where this gene is a part of.

    Methods inherited from class java.lang.Object

    clone, finalize, getClass, notify, notifyAll, wait, wait, wait

    Methods inherited from interface io.jenetics.util.Factory

    instances

    Methods inherited from interface io.jenetics.util.Self

    self

  • Method Details

    • validAlleles

      public ISeq<A> validAlleles()
      Return sequence of the valid alleles where this gene is a part of.
      Returns:
      the sequence of the valid alleles.

    • alleleIndex

      public int alleleIndex()
      Return the index of the allele this gene is representing.
      Returns:
      the index of the allele this gene is representing.

    • allele

      public A allele()
      Description copied from interface: Gene
      Return the allele of this gene.
      Specified by:
      allele in interface Gene<A,EnumGene<A>>
      Returns:
      the allele of this gene.

    • isValid

      public boolean isValid()
      Description copied from interface: Verifiable
      Check if this object is valid.
      Specified by:
      isValid in interface Verifiable
      Returns:
      true if this object is valid, false otherwise.

    • newInstance

      public EnumGene<A> newInstance()
      Description copied from interface: Gene
      Return a new, random gene with the same type and with the same constraints as this gene. For all genes returned by this method holds gene.getClass() == gene.newInstance().getClass(). Implementations of this method have to use the Random object which can be fetched from the RandomRegistry.
      Specified by:
      newInstance in interface Factory<A>
      Specified by:
      newInstance in interface Gene<A,EnumGene<A>>
      Returns:
      a new instance of type T

    • newInstance

      public EnumGene<A> newInstance(A value)
      Create a new gene from the given value and the gene context.
      Specified by:
      newInstance in interface Gene<A,EnumGene<A>>
      Parameters:
      value - the value of the new gene.
      Returns:
      a new gene with the given value.
      Since:
      1.6

    • compareTo

      public int compareTo(EnumGene<A> gene)
      Specified by:
      compareTo in interface Comparable<A>

    • hashCode

      public int hashCode()
      Overrides:
      hashCode in class Object

    • equals

      public boolean equals(Object obj)
      Overrides:
      equals in class Object

    • toString

      public String toString()
      Overrides:
      toString in class Object

    • of

      public static <A> EnumGene<A> of(int alleleIndex, ISeq<? extends A> validAlleles)
      Create a new enum gene from the given valid genes and the chosen allele index.
      Type Parameters:
      A - the allele type
      Parameters:
      alleleIndex - the index of the allele for this gene.
      validAlleles - the sequence of valid alleles.
      Returns:
      a new EnumGene with the given with the allele validAlleles.get(alleleIndex)
      Throws:
      IllegalArgumentException - if the give valid alleles sequence is empty
      NullPointerException - if the valid alleles seq is null.
      Since:
      3.4

    • of

      public static <A> EnumGene<A> of(ISeq<? extends A> validAlleles)
      Return a new enum gene with an allele randomly chosen from the given valid alleles.
      Type Parameters:
      A - the allele type
      Parameters:
      validAlleles - the sequence of valid alleles.
      Returns:
      a new EnumGene with a randomly chosen allele from the sequence of valid alleles
      Throws:
      IllegalArgumentException - if the give valid alleles sequence is empty
      NullPointerException - if the valid alleles seq is null.

    • of

      @SafeVarargs public static <A> EnumGene<A> of(int alleleIndex, A... validAlleles)
      Create a new enum gene from the given valid genes and the chosen allele index.
      Type Parameters:
      A - the allele type
      Parameters:
      alleleIndex - the index of the allele for this gene.
      validAlleles - the array of valid alleles.
      Returns:
      a new EnumGene with the given with the allele validAlleles[alleleIndex]
      Throws:
      IllegalArgumentException - if the give valid alleles array is empty of the allele index is out of range.

    • of

      @SafeVarargs public static <A> EnumGene<A> of(A... validAlleles)
      Return a new enum gene with an allele randomly chosen from the given valid alleles.
      Type Parameters:
      A - the allele type
      Parameters:
      validAlleles - the array of valid alleles.
      Returns:
      a new EnumGene with a randomly chosen allele from the sequence of valid alleles
      Throws:
      IllegalArgumentException - if the give valid alleles array is empty