Module io.jenetics.xml

Package io.jenetics.xml

Class Readers.Genotypes

java.lang.Object

io.jenetics.xml.Readers.Genotypes

Enclosing class:

Readers

public static final class Readers.Genotypes
extends Object

This class contains static reader methods for Genotype objects.

XML format

 
 <genotypes length="1">
     <genotype length="2" ngenes="5">
         <double-chromosome length="3">
             <min>0.0</min>
             <max>1.0</max>
             <alleles>
                 <allele>0.27251556008507416</allele>
                 <allele>0.003140816229067145</allele>
                 <allele>0.43947528327497376</allele>
             </alleles>
         </double-chromosome>
         <double-chromosome length="2">
             <min>0.0</min>
             <max>1.0</max>
             <alleles>
                 <allele>0.4026521545744768</allele>
                 <allele>0.36137605952663554</allele>
             <alleles>
         </double-chromosome>
     </genotype>
 </genotypes>
 

Method Summary

Modifier and Type	Method	Description
static <A, G extends Gene<A, G>, C extends Chromosome<G>> List<Genotype<G>>	read(InputStream in, Reader<? extends C> chromosomeReader)	Reads the genotypes by using the given chromosome reader.
static <A, G extends Gene<A, G>, C extends Chromosome<G>> Reader<List<Genotype<G>>>	reader(Reader<C> chromosomeReader)	Return a genotypes reader using the given chromosome reader.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

reader

public static <A,
G extends Gene<A,
G>,
C extends Chromosome<G>>
Reader<List<Genotype<G>>> reader(Reader<C> chromosomeReader)

Return a genotypes reader using the given chromosome reader.

Type Parameters:

A - the allele type

G - the gene type

C - the chromosome type

Parameters:

chromosomeReader - the underlying chromosome reader

Returns:

a genotypes reader using the given chromosome reader

Throws:

NullPointerException - if the given chromosomeReader is null

read

public static <A,
G extends Gene<A,
G>,
C extends Chromosome<G>>
List<Genotype<G>> read(InputStream in,
 Reader<? extends C> chromosomeReader)
                throws XMLStreamException

Reads the genotypes by using the given chromosome reader.

Type Parameters:

A - the allele type

G - the gene type

C - the chromosome type

Parameters:

in - the input stream to read the genotype from

chromosomeReader - the used chromosome reader

Returns:

a genotype by using the given chromosome reader

Throws:

XMLStreamException - if reading the genotype fails

NullPointerException - if one of the arguments is null