/*
 * Java Genetic Algorithm Library (jenetics-8.0.0).
 * Copyright (c) 2007-2024 Franz Wilhelmstötter
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *      http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 *
 * Author:
 *    Franz Wilhelmstötter (franz.wilhelmstoetter@gmail.com)
 */
package io.jenetics.ext.moea;

import static java.lang.Double.POSITIVE_INFINITY;
import static java.lang.String.format;
import static java.util.Objects.requireNonNull;

import java.util.ArrayList;
import java.util.Arrays;
import java.util.Comparator;
import java.util.List;
import java.util.function.ToIntFunction;

import io.jenetics.util.BaseSeq;
import io.jenetics.util.ISeq;
import io.jenetics.util.MSeq;
import io.jenetics.util.ProxySorter;

import io.jenetics.ext.internal.util.IntList;

/**
 * Low-level utility methods for doing pareto-optimal calculations. These methods
 * are mostly for users who want to extend the existing <em>MOEA</em> classes.
 *
 * @author <a href="mailto:franz.wilhelmstoetter@gmail.com">Franz Wilhelmstötter</a>
 * @version 4.1
 * @since 4.1
 */
public final class Pareto {

        private Pareto() {
        }

        /* *************************************************************************
         * Crowding distance methods.
         * ************************************************************************/

        /**
         * The crowding distance value of a solution provides an estimate of the
         * density of solutions surrounding that solution. The <em>crowding
         * distance</em> value of a particular solution is the average distance of
         * its two neighboring solutions.
         *
         * @apiNote
         * Calculating the crowding distance has a time complexity of
         * {@code O(d*n*log(n))}, where {@code d} is the number of dimensions and
         * {@code n} the {@code set} size.
         *
         * @see #crowdingDistance(BaseSeq, ElementComparator, ElementDistance, ToIntFunction)
         *
         * @param set the point set used for calculating the <em>crowding distance</em>
         * @param <T> the vector type
         * @return the crowded distances of the {@code set} points
         * @throws NullPointerException if the input {@code set} is {@code null}
         * @throws IllegalArgumentException if {@code set.get(0).length() < 2}
         */
        public static <T> double[]
        crowdingDistance(final BaseSeq<? extends Vec<T>> set) {
                return crowdingDistance(
                        set,
                        Vec::compare,
                        Vec::distance,
                        Vec::length
                );
        }

        /**
         * The crowding distance value of a solution provides an estimate of the
         * density of solutions surrounding that solution. The <em>crowding
         * distance</em> value of a particular solution is the average distance of
         * its two neighboring solutions.
         *
         * @apiNote
         * Calculating the crowding distance has a time complexity of
         * {@code O(d*n*log(n))}, where {@code d} is the number of dimensions and
         * {@code n} the {@code set} size.
         *
         * @see #crowdingDistance(BaseSeq)
         *
         * @param set the point set used for calculating the <em>crowding distance</em>
         * @param comparator the comparator which defines the (total) order of the
         *        vector elements of {@code T}
         * @param distance the distance of two vector elements
         * @param dimension the dimension of vector type {@code T}
         * @param <T> the vector type
         * @return the crowded distances of the {@code set} points
         * @throws NullPointerException if one of the arguments is {@code null}
         */
        public static <T> double[] crowdingDistance(
                final BaseSeq<? extends T> set,
                final ElementComparator<? super T> comparator,
                final ElementDistance<? super T> distance,
                final ToIntFunction<? super T> dimension
        ) {
                requireNonNull(set);
                requireNonNull(comparator);
                requireNonNull(distance);

                final double[] result = new double[set.length()];
                if (set.length() < 3) {
                        Arrays.fill(result, POSITIVE_INFINITY);
                } else {
                        for (int m = 0, d = dimension.applyAsInt(set.get(0)); m < d; ++m) {
                                final int[] idx = ProxySorter.sort(
                                        set,
                                        comparator.ofIndex(m).reversed()
                                );

                                result[idx[0]] = POSITIVE_INFINITY;
                                result[idx[set.length() - 1]] = POSITIVE_INFINITY;

                                final T max = set.get(idx[0]);
                                final T min = set.get(idx[set.length() - 1]);
                                final double dm = distance.distance(max, min, m);

                                if (Double.compare(dm, 0) > 0) {
                                        for (int i = 1, n = set.length() - 1; i < n; ++i) {
                                                final double dist = distance.distance(
                                                        set.get(idx[i - 1]),
                                                        set.get(idx[i + 1]),
                                                        m
                                                );

                                                result[idx[i]] += dist/dm;
                                        }
                                }
                        }
                }

                return result;
        }

        /* *************************************************************************
         * Pareto ranks methods.
         * ************************************************************************/

        /**
         * Calculates the <em>non-domination</em> rank of the given input {@code set},
         * using the <em>natural</em> order of the elements as <em>dominance</em>
         * measure.
         *
         * @apiNote
         * Calculating the rank has a time complexity of {@code O(n^2}, where
         * {@code n} the {@code set} size.
         *
         * <p>
         *  <b>Reference:</b><em>
         *      Kalyanmoy Deb, Associate Member, IEEE, Amrit Pratap,
         *      Sameer Agarwal, and T. Meyarivan.
         *      A Fast and Elitist Multiobjective Genetic Algorithm: NSGA-II,
         *      IEEE TRANSACTIONS ON EVOLUTIONARY COMPUTATION, VOL. 6, NO. 2,
         *      APRIL 2002.</em>
         *
         * @param set the input set
         * @param <T> the element type
         * @return the <em>non-domination</em> rank of the given input {@code set}
         */
        public static <T> int[] rank(final BaseSeq<? extends Vec<T>> set) {
                return rank(set, Vec::dominance);
        }

        /**
         * Calculates the <em>non-domination</em> rank of the given input {@code set},
         * using the given {@code dominance} comparator.
         *
         * @apiNote
         * Calculating the rank has a time and space complexity of {@code O(n^2},
         * where {@code n} the {@code set} size.
         *
         * <p>
         *  <b>Reference:</b><em>
         *      Kalyanmoy Deb, Associate Member, IEEE, Amrit Pratap,
         *      Sameer Agarwal, and T. Meyarivan.
         *      A Fast and Elitist Multiobjective Genetic Algorithm: NSGA-II,
         *      IEEE TRANSACTIONS ON EVOLUTIONARY COMPUTATION, VOL. 6, NO. 2,
         *      APRIL 2002.</em>
         *
         * @param set the input set
         * @param dominance the dominance comparator used
         * @param <T> the element type
         * @return the <em>non-domination</em> rank of the given input {@code set}
         */
        public static <T> int[] rank(
                final BaseSeq<? extends T> set,
                final Comparator<? super T> dominance
        ) {
                // Pre-compute the dominance relations.
                final int[][] d = new int[set.length()][set.length()];
                for (int i = 0; i < set.length(); ++i) {
                        for (int j = i + 1; j < set.length(); ++j) {
                                d[i][j] = dominance.compare(set.get(i), set.get(j));
                                d[j][i] = -d[i][j];
                        }
                }

                // Compute for each element p the element q that it dominates, and the
                // number of times it is dominated. Using the names as defined in the
                // referenced paper.
                final int[] nq = new int[set.length()];
                final List<IntList> fronts = new ArrayList<>();
                IntList Fi = new IntList();

                for (int p = 0; p < set.length(); ++p) {
                        final IntList Sp = new IntList();
                        int np = 0;

                        for (int q = 0; q < set.length(); ++q) {
                                if (p != q) {
                                        // If p dominates q, add q to the set of solutions
                                        // dominated by p.
                                        if (d[p][q] > 0) {
                                                Sp.add(q);

                                        // Increment the domination counter of p.
                                        } else if (d[q][p] > 0) {
                                                np += 1;
                                        }
                                }
                        }

                        // p belongs to the first front.
                        if (np == 0) {
                                Fi.add(p);
                        }

                        fronts.add(Sp);
                        nq[p] = np;
                }

                // Initialize the front counter.
                int i = 0;
                final int[] ranks = new int[set.length()];
                while (!Fi.isEmpty()) {
                        // Used to store the members of the next front.
                        final IntList Q = new IntList();

                        for (int p = 0; p < Fi.size(); ++p) {
                                final int fi = Fi.get(p);
                                ranks[fi] = i;

                                // The updates dominated counts as compute next front.
                                for (int k = 0, n = fronts.get(fi).size(); k < n; ++k) {
                                        final int q = fronts.get(fi).get(k);
                                        nq[q] -= 1;

                                        // q belongs to the next front.
                                        if (nq[q] == 0) {
                                                Q.add(q);
                                        }
                                }
                        }

                        ++i;
                        Fi = Q;
                }

                return ranks;
        }

        /* *************************************************************************
         * 'front'
         * ************************************************************************/

        /**
         * Return the elements, from the given input {@code set}, which are part of
         * the pareto front. The {@link Comparable} interface defines the dominance
         * measure of the elements, used for calculating the pareto front.
         * <p>
         *  <b>Reference:</b><em>
         *      E. Zitzler and L. Thiele.
         *      Multiobjective Evolutionary Algorithms: A Comparative Case Study
         *      and the Strength Pareto Approach,
         *      IEEE Transactions on Evolutionary Computation, vol. 3, no. 4,
         *      pp. 257-271, 1999.</em>
         *
         * @param set the input set
         * @param <T> the element type
         * @return the elements which are part of the pareto set
         * @throws NullPointerException if one of the arguments is {@code null}
         */
        public static <T> ISeq<Vec<T>> front(final BaseSeq<? extends Vec<T>> set) {
                return front(set, Vec::dominance);
        }

        /**
         * Return the elements, from the given input {@code set}, which are part of
         * the pareto front.
         * <p>
         *  <b>Reference:</b><em>
         *      E. Zitzler and L. Thiele.
         *      Multiobjective Evolutionary Algorithms: A Comparative Case Study
         *      and the Strength Pareto Approach,
         *      IEEE Transactions on Evolutionary Computation, vol. 3, no. 4,
         *      pp. 257-271, 1999.</em>
         *
         * @param set the input set
         * @param dominance the dominance comparator used
         * @param <T> the element type
         * @return the elements which are part of the pareto set
         * @throws NullPointerException if one of the arguments is {@code null}
         */
        public static <T> ISeq<T> front(
                final BaseSeq<? extends T> set,
                final Comparator<? super T> dominance
        ) {
                final MSeq<T> front = MSeq.of(set);

                int n = front.size();
                int i = 0;
                while (i < n) {
                        int j = i + 1;
                        while (j < n) {
                                if (dominance.compare(front.get(i), front.get(j)) > 0) {
                                        --n;
                                        front.swap(j, n);
                                } else if (dominance.compare(front.get(j), front.get(i)) > 0) {
                                        --n;
                                        front.swap(i, n);
                                        --i;
                                        break;
                                } else {
                                        ++j;
                                }
                        }
                        ++i;
                }

                return front.subSeq(0, n).copy().toISeq();
        }


        /* *************************************************************************
         * Common 'dominance' methods.
         * ************************************************************************/

        /**
         * Calculates the <a href="https://en.wikipedia.org/wiki/Pareto_efficiency">
         *     <b>Pareto Dominance</b></a> of the two vectors <b>u</b> and <b>v</b>.
         *
         * @see Vec#dominance(Comparable[], Comparable[])
         *
         * @param u the first vector
         * @param v the second vector
         * @param <C> the element type of vector <b>u</b> and <b>v</b>
         * @return {@code 1} if <b>u</b> ≻ <b>v</b>, {@code -1} if <b>v</b> ≻
         *         <b>u</b> and {@code 0} otherwise
         * @throws NullPointerException if one of the arguments is {@code null}
         * @throws IllegalArgumentException if {@code u.length != v.length}
         */
        public static <C extends Comparable<? super C>> int
        dominance(final C[] u, final C[] v) {
                return dominance(u, v, Comparator.naturalOrder());
        }

        /**
         * Calculates the <a href="https://en.wikipedia.org/wiki/Pareto_efficiency">
         *     <b>Pareto Dominance</b></a> of the two vectors <b>u</b> and <b>v</b>.
         *
         * @see Vec#dominance(Object[], Object[], Comparator)
         *
         * @param u the first vector
         * @param v the second vector
         * @param comparator the element comparator which is used for calculating
         *        the dominance
         * @param <T> the element type of vector <b>u</b> and <b>v</b>
         * @return {@code 1} if <b>u</b> ≻ <b>v</b>, {@code -1} if <b>v</b> ≻
         *         <b>u</b> and {@code 0} otherwise
         * @throws NullPointerException if one of the arguments is {@code null}
         * @throws IllegalArgumentException if {@code u.length != v.length}
         */
        public static <T> int
        dominance(final T[] u, final T[] v, final Comparator<? super T> comparator) {
                requireNonNull(comparator);
                checkLength(u.length, v.length);

                return dominance(
                        u, v, u.length, (a, b, i) -> comparator.compare(a[i], b[i])
                );
        }

        /**
         * Calculates the <a href="https://en.wikipedia.org/wiki/Pareto_efficiency">
         *     <b>Pareto Dominance</b></a> of the two vectors <b>u</b> and <b>v</b>.
         *
         * @see Vec#dominance(int[], int[])
         *
         * @param u the first vector
         * @param v the second vector
         * @return {@code 1} if <b>u</b> ≻ <b>v</b>, {@code -1} if <b>v</b> ≻
         *         <b>u</b> and {@code 0} otherwise
         * @throws NullPointerException if one of the arguments is {@code null}
         * @throws IllegalArgumentException if {@code u.length != v.length}
         */
        public static int dominance(final int[] u, final int[] v) {
                checkLength(u.length, v.length);

                return dominance(
                        u, v, u.length, (a, b, i) -> Integer.compare(a[i], b[i])
                );
        }

        /**
         * Calculates the <a href="https://en.wikipedia.org/wiki/Pareto_efficiency">
         *     <b>Pareto Dominance</b></a> of the two vectors <b>u</b> and <b>v</b>.
         *
         * @see Vec#dominance(long[], long[])
         *
         * @param u the first vector
         * @param v the second vector
         * @return {@code 1} if <b>u</b> ≻ <b>v</b>, {@code -1} if <b>v</b> ≻
         *         <b>u</b> and {@code 0} otherwise
         * @throws NullPointerException if one of the arguments is {@code null}
         * @throws IllegalArgumentException if {@code u.length != v.length}
         */
        public static int dominance(final long[] u, final long[] v) {
                checkLength(u.length, v.length);

                return dominance(
                        u, v, u.length, (a, b, i) -> Long.compare(a[i], b[i])
                );
        }

        /**
         * Calculates the <a href="https://en.wikipedia.org/wiki/Pareto_efficiency">
         *     <b>Pareto Dominance</b></a> of the two vectors <b>u</b> and <b>v</b>.
         *
         * @see Vec#dominance(double[], double[])
         *
         * @param u the first vector
         * @param v the second vector
         * @return {@code 1} if <b>u</b> ≻ <b>v</b>, {@code -1} if <b>v</b> ≻
         *         <b>u</b> and {@code 0} otherwise
         * @throws NullPointerException if one of the arguments is {@code null}
         * @throws IllegalArgumentException if {@code u.length != v.length}
         */
        public static int dominance(final double[] u, final double[] v) {
                checkLength(u.length, v.length);

                return dominance(
                        u, v, u.length, (a, b, i) -> Double.compare(a[i], b[i])
                );
        }

        private static void checkLength(final int i, final int j) {
                if (i != j) {
                        throw new IllegalArgumentException(format(
                                "Length are not equals: %d != %d.", i, j
                        ));
                }
        }

        /**
         * Calculates the <a href="https://en.wikipedia.org/wiki/Pareto_efficiency">
         *     <b>Pareto Dominance</b></a> of the two vectors <b>u</b> and <b>v</b>.
         *
         * @since 5.2
         *
         * @param u the first vector
         * @param v the second vector
         * @param dimensions the number of vector elements
         * @param comparator the comparator used for comparing the vector elements
         * @param <V> the vector type
         * @return {@code 1} if <b>u</b> ≻ <b>v</b>, {@code -1} if <b>v</b> ≻
         *         <b>u</b> and {@code 0} otherwise
         * @throws NullPointerException if one of the arguments is {@code null}
         */
        public static <V> int dominance(
                final V u,
                final V v,
                final int dimensions,
                final ElementComparator<? super V> comparator
        ) {
                boolean udominated = false;
                boolean vdominated = false;

                for (int i = 0; i < dimensions; ++i) {
                        final int cmp = comparator.compare(u, v, i);

                        if (cmp > 0) {
                                if (vdominated) {
                                        return 0;
                                } else {
                                        udominated = true;
                                }
                        } else if (cmp < 0) {
                                if (udominated) {
                                        return 0;
                                } else {
                                        vdominated = true;
                                }
                        }
                }

                if (udominated == vdominated) {
                        return 0;
                } else if (udominated) {
                        return 1;
                } else {
                        return -1;
                }
        }

}